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Industrial Crops and Products 97 (2017) 639–648 Contents lists available at ScienceDirect Industrial Crops and Products journal homepage: www.elsevier.com/locate/indcrop Role of conventional and biotechnological approaches for genetic improvement of cluster bean Sushil Kumar a,∗ , Arpan R. Modi a , Mithil J. Parekh a , Hans R. Mahla b , Ramavtar Sharma b , Ranbir S. Fougat a , Devvart Yadav c , Neelam R. Yadav d , Ghanshyam B. Patil a a Department of Agricultural Biotechnology, Anand Agricultural University (AAU), Anand, 388 110, India Division of Plant Improvement, Propagation and Pest Management, Central Arid Zone Research Institute (CAZRI), Jodhpur, 342 003, India c Department of Genetics and Plant Breeding, CCS Haryana Agricultural University (CCSHAU), Hisar, 125 004, India d Department of Biotechnology and Molecular Biology, CCS Haryana Agricultural University (CCSHAU), Hisar, 125 004, India b a r t i c l e i n f o Article history: Received 12 May 2016 Received in revised form 3 January 2017 Accepted 7 January 2017 Keywords: Breeding Biotechnology Cluster bean Diversity Guar Molecular markers a b s t r a c t Cluster bean [Cyamopsis tetragonoloba (L.) Taub. (Syn. C. psoraliodes)], commonly known as guar and an important crop from family Leguminaceae, is grown under resource constrained situations for use as seed, vegetable and forage in arid and semi-arid regions. The seed of this drought-resilient legume contains galactomannan polysaccharide, used in wide range of industries, which has made this orphan crop a high-valued cash crop. Cluster bean shows limited variability for morphological and agronomic traits. Narrow genetic base of cultivated cluster bean varieties and yield losses due to both biotic and abiotic stresses has hampered the intensive breeding efforts in cluster bean. Conventional breeding methods viz. induced mutations, wide-hybridization and induce male sterility have been employed to broaden the limited genetic base and for genetic improvement of cluster bean. Due to its pivotal role in rainfed agriculture, research efforts using biotechnological interventions like molecular markers, tissue culture and transformation have been initiated to boost the varietal improvement but development of these tools are still at early stage in cluster bean. This article attempts to summarize and discuss the recent progress made in mutation breeding, distant hybridization, DNA marker studies, development of in-vitro propagation system and genetic transformation protocols. © 2017 Elsevier B.V. All rights reserved. Contents 1. 2. 3. 4. Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 639 Genetic improvement of cluster bean through conventional approaches . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 640 2.1. Genetic diversity and germplasm resources . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 640 Induced variation through mutation . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 641 2.2. 2.3. Wide crosses and distant hybridization . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 642 2.4. Male sterility and heterosis breeding . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 642 Role of biotechnology in cluster bean improvement . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 642 Molecular markers . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 642 3.1. Tissue culture, regeneration protocols and genetic transformation . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 643 3.2. Conclusion and future prospects . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 646 References . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 646 1. Introduction ∗ Corresponding author. E-mail addresses: sushil254386@gmail.com, sushil254386@yahoo.com (S. Kumar). http://dx.doi.org/10.1016/j.indcrop.2017.01.008 0926-6690/© 2017 Elsevier B.V. All rights reserved. Globally cluster bean/guar (Cyamopsis tetragonoloba, 2n = 14), a member of family Leguminaceae, is an important crop of arid and semi-arid regions (Kumar et al., 2015). It is believed that geographic 640 S. Kumar et al. / Industrial Crops and Products 97 (2017) 639–648 centre of origin of cluster bean is India although no wild species has been reported in country. Gillette (1958) pointed out that tropical Africa is its probable centre of origin as wild species were found to occur in that region. Due to deep rooted system, this short duration, hardy and drought resilient legume is extremely adapted to the inhospitable environment of rainfed regions. This ancient legume is mainly cultivated for feed and food (Singh and Dahiya, 2004) therefore providing nutrition to both mankind and animals. It is used for human consumption and cattle feed (30–40%), industrial purpose (50–55%), medicinal (5%) as well as for soil improvement and other miscellaneous purposes. Due to multiple usages and presence of gum in its seeds, cluster bean has been emerged as a unique high-valued commercial crop. Cluster bean is predominantly autogamous and bears beans or pods in clusters, hence named as cluster bean. The light-grey, pink, white or black coloured seed consists of 43–47% germ, 35–42% endosperm and 14–17% husk (Goldstein and Alter, 1959). In cluster bean seed, nearly 90% (w/w) portion of the spherical-shaped endosperm is deposited with galactomannan gum −a polysaccharide synthesized in Golgi apparatus (Dhugga et al., 2004). In cold water, this odourless polysaccharide forms a thick colloidal solution (Das and Arora, 1978). Galactomannan gum has a genetically controlled ratio (1:2) of galactose to mannose (Sandhu et al., 2009). The gum consists of a mannose framework with a galactose group attached to it and act as reserve of glucose to be used by the seed during germination. Cluster bean gum has diversified uses such as in textile, ore-/metal-refining, paper, coal-mining, petroleum drilling, cosmetic and pharmaceuticals, explosion manufacture, potash purification, tobacco and food enterprises (Punia et al., 2009; Kuravadi et al, 2013). It is an integral part of the natural gas exploration process known as a hydraulic fracture. Due to hydrophilic and swelling nature, the gum and its derivatives in various forms such as coatings, matrix tablets, hydrogels, and nano- or micro-particle have found their use in developing slow releasing and targeted drug delivery (Prabaharan, 2011). Cluster bean is also being utilized to cure diabetic and lipoproteins/cholesterol patients (Kumar et al., 2013). Cluster bean requires reasonably warm weather and moderate rainfall for its growth and therefore, it is mainly cultivated as a cash crop in the Indian subcontinent (India and Pakistan). Though, to a narrow extent, the crop is also under cultivation in Australia, Bangladesh, Myanmar, USA, South Africa, Brazil, Congo, Sri Lanka (Boghara et al., 2015). Due to abrupt and unexpected rise in demand of guar and its gum in recent years, its cultivation has extended to resource rich regions and alternative seasons under proper management (Kumar et al., 2015). The chief importer of guar gum and its derivatives is Australia, Austria, Brazil, Canada, China, Chile, Germany, Greece, Ireland, Italy, Japan, Mexico, Portugal, Sweden, UK and USA (NRAA, 2014). The annual world’s total cluster bean gum and its derivatives production is around 0.75–1.0 million tonnes. Globally, India ranks first in production as producing about 75–82% of the world’s cluster bean followed by Pakistan (10–12%). In India, with 75% of total production, Rajasthan is the top cluster bean producing state. In spite of its importance, the productivity of this crop is very low and hence there is need to enhance the yield of cluster bean. Lack of suitable early maturing high yielding varieties, an incidence of many fungal and bacterial diseases in rainfed cultivation, improper time of sowing, inadequate fertilization and improper agronomic practices are major production constraints for adequate production of this versatile crop. Therefore, there is an urgency to design breeding approaches aiming at developing proper plant architecture coupled with tolerance to abiotic and biotic stresses in order to stabilize the yield of guar at higher level of production. At the morphological level, cluster bean germplasm showed variability (Saini et al., 1981; Mishra et al., 2009; Pathak et al., 2011c) but this variability is not sufficient for stress tolerance and gum content. Therefore, broadening the genetic base and developing stress tolerant varieties with high galactomannan content is restricted due to inadequate variability available for these traits. Thus, along with various conventional breeding approaches like mutation breeding, distant hybridization, male sterility etc, there is urgent need to explore non-conventional genetic improvement approaches like molecular marker, tissue culture and genetic transformation technologies. This article reviews the conventional breeding work done, highlights the current role of biotechnology and its future prospects to enhance production and productivity of cluster bean through genetic improvement. 2. Genetic improvement of cluster bean through conventional approaches 2.1. Genetic diversity and germplasm resources The availability of genetic diversity and its successful collection, maintenance, utilization and conservation is pre-requisite for crop improvement program (Poehlman and Sleper, 1995). The genetic variability existing in cluster bean germplasm has been evaluated by using various morphological and biochemical traits. Conspicuous morphological variations are displayed for branching (branched/unbranched), pubescence (hairy/smooth), pod shape (straight/sickle), growth habit (determinate to indeterminate), pod bearing pattern (regular/irregular) (Saini et al., 1981). In India, the exhaustive catalogue by Dabas et al. (1989) has provided information on fifteen morpho-physiological and yield traits along with place of collection for all 3580 accessions. Many important traits like plant height (46.75–239 cm), clusters per plant (1.75–64.5), pods per plant (2.25–262.35), pod length (1.85–19.3 cm), seeds per pod (4.15–13.0) days to maturity (128–185 d), seed yield (0.95–59.7) and 100 seed weight (1.9–4.75 g) showed a high degree of diversity. Though, there was paucity of early flowering and maturing genotypes in this collection but was later on enriched by many collections evaluated at Regional Station, National Bureau of Plant Genetic Resources (NBPGR), Jodhpur, India where certain genotypes flowered as early as 28 days and matured in 70 days. Many other studies involving comparatively limited genotypes though reported considerable diversity towards desirable direction but with reduced range (Mishra et al., 2009; Pathak et al., 2011a, 2011c). Plant height and branches per plant on a higher side are important as they bear more clusters and branches (Dabas et al., 1989). High level of diversity for yield traits viz. number of pods, clusters etc. have also been reported by many studies along with other morphological traits (Mittal et al., 1977; Dabas et al., 1982; Henry and Mathur, 2005; Mahla and Kumar, 2006; Pathak et al., 2009; Pathak et al., 2010a; Kumar et al., 2014; Girish et al., 2012; Sultan et al., 2012; Manivannan and Anandakumar, 2013; Manivannan et al., 2015; Kumar and Ram, 2015). Morris (2010) characterized 73 accessions collected from India, Pakistan and USA; and reported enough genetic variability pod length (32–110 mm), 100 seed weight (2.3–4.8 gm) and number of days to 50% maturity (96–185 days). Despite of commercial importance, biochemical studies on gum content are limited. The remaining part of seed comprising of seed coat and protein rich germ makes good animal feed. A few studies have indicated some extent of diversity in these biochemical and nutritional traits. Pathak et al. (2009) reported considerable variation for endosperm proportion (30.4–46.3%), gum content (23.9–34.2%) along with crude fibre (4.1–8.0%), oil (1.8–5.2%), crude protein (28.3–35%), carbohydrate (38.8–59.1%) and minerals (3.5–6.0%). However, comparatively narrow range was obtained by Kays et al. (2006) for dietary fibre (52.4–57.7%), S. Kumar et al. / Industrial Crops and Products 97 (2017) 639–648 protein (22.9–30.6%), fat (2.88–3.45%) and ash (3.04–3.53%). In addition to above primary phytochemicals, Wang and Morris (2007) observed variations for seed derived secondary metabolites viz. daidzein, genistein, quercetin and kaempferol in guar germplasm. A number of studies have indicated significant correlations among economically important traits resulting in simultaneous improvement of various traits (Henry and Mathur, 2008; Mahla and Kumar 2006; Shekhawat and Singhania, 2005; Singh et al., 2005a, 2005b). Many economically important traits like pods per plant, pod length, clusters per plant, number of branches and hundred seed weight were found positively associated with seed yield (Sidhu et al., 1982; Vijay, 1988; Gresta et al., 2016). Positive correlations among grain yield and gum content were not followed for seed weight and gum percentage (Menon et al., 1970; Mittal et al., 1971). However, percent endosperm was positively correlated with gum percentage (Menon et al., 1970; Lal and Gupta, 1977). In India, cluster bean improvement program was started in 1950s. The initial breeding emphasis was on vegetable type genotypes but later, due to realization of cluster bean as industrial crop, research on seed type genotypes for gum content was intensified. Therefore, in 1961, systematic development of genetic resources was initiated by Division of Plant Introduction, Indian Agricultural Research Institute (Now NBPGR), New Delhi by collecting diverse guar germplasm sources from prime areas (Gujarat, Rajasthan and Punjab) of variability (Thomas and Dabas, 1982). Real momentum was picked up during 1965–70 by launching a scheme entitled: Collection and isolation of superior genotypes for gum purposes from, under Public Law 480 in 1954 (Agricultural Trade Development and Assistance Act). Consequently, two catalogues were published in succession containing information on1150 accessions in 1981 (Dabas et al., 1981) and 3580 accessions in 1988 (Dabas et al., 1989). In addition to this, independent collections were made and maintained at various research centres of state agriculture universities especially in the North-western Indian states (Rajasthan, Gujarat, Haryana and Punjab). Presently National Gene Bank at NBPGR, India is maintaing about 5000 accessions of cluster bean along with C. serrata and C. senegalensis −two close wild relatives of guar. Cluster bean improvement work started at Durgapura (Rajasthan), Hisar (Haryana) and CAZRI (Rajasthan) with collection and assessment of germplasm which resulted selection/identification of a number of high yielding genotypes (Paroda and Saini, 1978; Henry et al., 1992; Singh et al., 1995; Mahla et al., 2011). According to report of Mishra et al. (2009), NBPGR, India is maintaining 4878 indigenously collected accessions in medium term storages while efforts have also been made for long term ex situ conservation of 3714 accessions. Till now, using traditional breeding techniques like mass selection and pedigree methods nearly 40 varieties for vegetable as well as seed purposes has been released in India (Pathak, 2015). Though morphological variability exists in cluster bean but it is inadequate for various economic traits (Jukanti et al., 2015); therefore cluster bean breeding is slower and there is urgency to broaden the genetic base through germplasm introduction, mutagenesis, distant hybridization (Kumar et al., 2015). Similar to NBPGR, India the United States Department of Agriculture, Agricultural Research Service, Plant Genetic Resources Conservation Unit (USDA, ARS, PGRCU) also conserves 1298 accessions originating from India, Pakistan, and breeding lines from the USA (Morris 2010). 2.2. Induced variation through mutation Natural genetic diversity coupled with induced variability forms the basis for improvement of all major food crops (Parry et al., 2009). The utilization of artificial and/or induced mutation to create new elite alleles is a powerful tool in crops like cluster bean 641 where variability at genetic level is low. However, in comparison to induced mutation, frequency of desired natural mutation is very low for accelerated plant breeding. Hence, artificial mutation using physical and chemical mutagens is the best way to expand genetic variability in short time period (Auti, 2012). Though, the success of mutation either natural or induced depends on efficiency to create desirable changes with least undesirable changes (Harten, 1998; Pathak, 2015). Artificial mutagenesis could be better option for enriching variation in guar having small cleistogamous flowers difficult for emasculation and further artificial crossing (Arora and Pahuja, 2008). Induced mutation by gamma rays in cluster bean was for the first time carried out by Vig (1965) where 60 Co was a as source of radiation. He reported low fertility mutant in a gamma (20 kR/200 Gray; 1 kR = 10 Gray) irradiated population of cluster bean cv. Punjab G2. Semi-sterile variants reported by him were outcome of reciprocal translocations and compared with fertile plants, these variants were taller and low yielder and showed more racemes perplant with prolonged vegetative period. Study of Vig (1969) also pointed out that the guar chromosomes are radio-resistance as a dose as 30,000 kR as showed no detectable effect on the chromosomes. This might be a delayed effect of radiation due to small chromosomes size. Adverse effects of irradiation doses (10, 20, 40, 60, 80, 100, 150 and 200 kR) on morphology of guar was recorded by Lather and Chowdhury (1972) where germination rate, seedling mortality rate and pollen fertility were inversely proportional to radiation dosage. Similarly, chromosomal abnormalities such as translocation, anaphase bridges and laggards were found in the progenies obtained from treated seeds. Irradiation at higher dose (100–200 kR/1000-2000 Gray) completely repressed the germination hence was demonstrated as lethal. Though, mutants generated at low doses (2, 5, 10, 15 and 20 kR) of gamma rays showed increments for number of seed per plant, protein and galactomannan in seeds of M2 generation (Chaudhary et al., 1973). A high yielding stable early-flowering mutant of Pusa Navbahar was recorded by Rao and Rao (1982) in population created by irradiation from 60 Co source of X-rays (10 kR/100 Gray). Indeterminate growth habit where vegetative and reproductive stage occurs simultaneously is one of important reasons for low yield of cluster bean crop. To avoid such yield loss, Singh et al. (1981) irradiated genotype B-5-54 with gamma rays (20, 40, 60, 80, 100, 150 and 200kR) and identified a macro-mutant exhibited determinate growth habit with early flowering. Using gamma-rays (80 kR/800 Gray), ethyl methanesulfonate (EMS) (0.1%) and N-NitrosoN-methylurea (NMU) (0.01%) alone or in combination, Singh and Aggarwal (1986) produced many mutants of PLG143 genotypes also showed early flowering, high and long pod, better yields and gum percentage (17%). In a mutation study with gamma rays and EMS treatment in two cultivars (Pusa Navbahar and VRS-culture), Babariya et al. (2008) found that apart from variability creation mutagens also altered the correlation between traits studied hence selection in desired direction for trait(s) of interest is be possible. Mahla et al. (2005, 2010) and Velu et al. (2007, 2012) carried out physical (gamma-rays) and chemical (EMS) mutagenesis and detected a gradual decrement in plant height as well as many other agronomic traits with the increased mutagen dose in cluster bean cultivars. Similar results were also obtained previously by Bhosale and Kothekar (2010) in the cluster bean. They recorded increase in the mutation frequency with increased doses of gamma rays and chemical mutagens EMS and sodium azide (SA). Polyploidization was also explored as means to increase the variability by Vig (1963) and Bewal et al. (2009) however, no significant achievement was reported. However, work on mutation breeding of guar is limited and only a few mutants carrying one or two useful attributes have been obtained so far. Therefore, there is a need to carry out exten- 642 S. Kumar et al. / Industrial Crops and Products 97 (2017) 639–648 sive mutation work in guar to get desirable variability for further exploitation in breeding (Arora and Pahuja, 2008). Moreover, still basic information regarding choice of perfect mutagen(s) and correct dose(s) need to be identified for proper application of mutation technology for guar improvement. 2.3. Wide crosses and distant hybridization Wild crop gene pool is a rich reservoir of rare alleles. Wide/distant hybridization in crop plants, especially in crops with the limiting variability, is an integral part of breeding to widen the genetic base and to incorporate various desirable traits into the agronomically desirable species (Singh et al., 2015). Besides, wide hybridization is also a useful method in taxonomic and phylogenic studies (Sandhu, 1988). Gillette (1958) alienated the genus Cyamposis of tribe Indigofereae (Leguminosae) into three species viz., C. tetragonoloba, C. senegalensis and C. serrata. As per hypothesis of Hymowitz, gene pool-1A (domesticated) consists of the cultigen C. tetragonoloba and the gene pool–1 B (wild) of C. senegalensis. Both wild relatives are identified as reservoir for many desirable traits like tolerance to disease and drought (Orellana, 1966; Menon, 1973), insensitivity to light and temperature (Anonymous, 1984). Thus, interspecific hybridization between cluster bean and C. senegalensis or C. serrata can be exploited to generate hybrids possessing early maturity, disease resistance and photo-and thermo-insensitivity (Sandhu 1988). Distant hybridization though might have potential in genetic improvement, has so far remained unexploited and less successful, due to incompatibility in species combinations probably because of fragile pollen germination, abnormal pollen tube development or incompatible interaction of pollen with stigma and style. A complete failure of conventional wide crossing between cluster bean and C. serrata has been revealed by Sandhu (1988) and this might be due to the unreceptiveness of stigma for foreign pollens. To make stigma receptive Sandhu (1988) also deployed other approaches like bud pollination, stigma/style amputation, use of organic solvents but was unsuccessful to get the stigma-pollen compatibility. Thus, in cluster bean, interspecific hybridization is limited because of pre-and/or postfertilization barriers (Ahlawat et al., 2013a,b). Mathiyazhagan (2007) reported failure in achieving interspecific hybridization between cultivated guar genotypes and wild species. Very few pollen grains [5–7] of wild species were seen on the stigma of cultivated species. Scope for interspecific hybridization is limited in cluster bean (Pathak, 2015). However, use of two simple techniques viz., bud and stump pollination ensured and increased the fertilization frequency. Virender (2008) exemplified five pods out of 300 crosses attempted from interspecific crosses between HG 563 (C. tetragonoloba) and C. serrata. Similarly, in another 250 interspecific crosses between FS 277 × C. serrata, Virender (2008) could harvest merely three pods. To discover the barriers of interspecific hybridization, Ahlawat et al. (2013c) formulated a study with three species of Cyamopsis and made crosses between C. tetragonoloba × C. serrata and C. tetragonoloba × C. senegalensis. In this study, the length of the style of C. tetragonoloba and C. serrata was almost similar (2.6 mm) though C. senegalensis possessed longest style (3.8 mm). Studies deploying conventional method of plant breeding revealed no pod setting in the above said crosses. In addition to the conventional breeding method, Ahlawat et al. (2013a,b) attempted non-conventional methods like stub pollination with or without smearing with pollen germination medium (PGM), in-vivo placental pollination were attempted. In this interspecific hybridization study, through stub smeared with pollen germination medium (PGM), they found 10.43% of pod setting (83 out of 792 crosses) between C. tetragonoloba × C. serrata cross. The low success rate in their study indicates that systematic intense efforts to identify pre- as well as post- fertilization barriers and future studies on sexual incompatibility phenomenon between cultivated and wild species might aid in overcoming the failure of interspecific hybridization. 2.4. Male sterility and heterosis breeding Compared with soybean, cowpea and pigeonpea where malesterility has been successfully used (Saxena et al., 2010, 2015), male sterility phenomenon was not exploited much in cluster bean (Arora and Pahuja, 2008). This is either due to non-availability of natural outcrossing system, or an efficient male-sterility system or both. A number of natural mutations have been reported in guar for male sterility (Stafford, 1989; Mittal et al., 1968; Vig, 1965). Spontaneous complete as well as partial male sterility in cluster bean was observed by Mittal et al. (1968). He also mentioned that this trait was inherited monogenically where pollen fertility was recorded dominant over sterility. During induced mutagenesis, Vig (1965) and Kinnmann et al. (1969) found that reciprocal translocations phenomenon caused semi-sterility in guar and was responsible for setting of fewer seeds in pod, more racemes per plant and extra plant height than fertile plants. Later on in South Africa, Stafford (1989) recorded a partially sterile mutant in cluster bean having rosette-type inflorescence (raceme). During the study, Stafford (1989) also described that partial mate-sterility in cluster bean is governed by two genes, of which one is dominant epistatic while another is incomplete dominant. As per Stafford (1989) this partial male-sterility (pms) was totally unique from genetic male-sterility (ms) observed by Mittal et al. (1968). Several workers described an extensive range of heterosis in cluster bean (Chaudhary et al., 1981; Saini et al., 1990; Arora et al., 1998). However, for commercial exploitation of heterosis, stable male sterility along with complete fertility restoration is a prerequisite. Due to absence of stable source of male sterility a limited work on heterosis breeding has been reported in cluster bean. The opportunity of heterosis breeding is practically low in the absence of methods for economic production of large quantities of hybrid seed (Pathak, 2015). Owing to unavailability of stable male sterility, efforts have been made to develop stable and operational male sterility by male gametocides or chemical hybridizing agents (CHAs) and physical agents. Nisha and Chauhan (2006) found benzotriazole, maleic hydrazide (MH) and ethrel (ethephon) to be useful in induction of male sterility in cluster bean. Various concentration and treatments of all three chemicals induced pollen sterility between 92 and 100%. Although ethrel (0.3%) was more sensitive and induce complete sterility but associated significantly in yield reduction. Chauhan and Nisha (2006) reported that foliar spray of benzotriazole induced 93–100% pollen sterility in cluster bean. A comparative light and transmission electron microscopic study showed abnormal behaviour of tapetal mitochondria in pollen caused pollen abortion. Shinde and More (2010) analysed the effect of different mutagenic treatments on the pollen sterility while working on gamma rays mutagenesis. Gamma rays at 400 gray (40 kR) dosage were found to be most effective as induced maximum sterility (20.83%). 3. Role of biotechnology in cluster bean improvement 3.1. Molecular markers Success of any breeding strategy depends on the available genetic diversity and its precise assessment. Plant breeders conventionally used morphological characters (both quantitative and qualitative) for diversity analysis as well as for selection (Henry and Mathur, 2005; Pathak et al., 2011b; Kumar et al., 2013). But variability assessment based on such morphological traits usually fail S. Kumar et al. / Industrial Crops and Products 97 (2017) 639–648 to reflect accurate genetic variation and are susceptible to environmental factors, and at many times make selection efforts ineffective (Pathak et al., 2011d; Kumar et al., 2015). Hence, for some time DNA based molecular markers have been found suitable and convenient for the assessment of genetic diversity, cultivar/hybrid purity test, variety/genotype identification and selecting the diverse genotypes for hybrid development. Moreover, molecular markers could also be exploited to trace a gene of interest, before its phenotypic expression (Lübberstedt and Varshney, 2013). Though, the reports on extent and pattern of genetic variability especially at DNA level in cluster bean are insufficient (Sharma et al., 2014b). Despite variability at morpho-agronomic level, isozymes variation study through electrophoretic technique in guar germplasm has not been employed in depth for genetic diversity analysis. Mauria (2000) made primary attempt in cluster bean to understand domestication through isozyme diversity in primitive landrace accessions from India along with released cultivars from USA, and two wild relatives (C. serrata and C. senegalensis). Later on, Brahmi et al. (2004) made attempt to resolve the diversity in cluster bean germplasm with allozyme markers and reported greater interpopulation diversity as compared with the overall genetic diversity in guar. Because of environmental sensitivity, inconsistency, fewer loci and low polymorphism of protein markers (isozymes and allozymes), marker analysis inclined towards DNA-based marker system. Previous studies indicated that employing DNA markers in crop improvement can economize both time and resources (Shah et al., 2015a). In the last decade or so, studies have been conducted for assessing genetic diversity and phylogenetic of cluster bean using DNA markers (Table 1). Among various DNA based marker system, Random Amplification of Polymorphic DNA (RAPD) has been more frquently used in cluster bean for diversity analysis and to study genetic relationships (Weixin et al., 2009; Punia et al., 2009; Pathak et al., 2011d; Rodge et al., 2012; Sharma et al., 2013, 2014a, b; Sharma and Sharma, 2013; Kuravadi et al., 2013; Ajit and Priyadarshani, 2013; Kumar et al., 2013; Kalaskar et al., 2014; Patel et al., 2014). Though, RAPD markers show low reproducibility and not repeatable but have been extensively used for assessment of genetic diversity, germplasm characterization, cultivar identification, genetic purity testing, and gene tagging. Sharma et al. (2014b) reported that Inter-Simple Sequence Repeat (ISSR) are more powerful than RAPD due to their higher capacity to reveal polymorphisms and greater potential to determine intra and intergenomic diversity. Similar to other crops, for molecular diversity analysis in cluster bean, ISSRs have been preferred over (Kuravadi et al., 2013; Sharma et al., 2014a,b). Evaluation of cluster bean with both RAPD and ISSR indicated the presence of substantial diversity in cluster bean. Though, RAPD and ISSR are relatively simple to use, highly effective and independent to prior sequence knowledge but are poor in reproducibility and stability. Therefore, in order to resolve this issue, Paran and Michelmore (1993) converted the RAPD markers into sequence-characterized amplified region (SCAR) marker by molecular cloning (Cheng et al., 2015). SCAR markers, a derivation of RAPD, ISSR and Amplified fragment length polymorphism (AFLP), are co-dominant, locus-specific and; consistent and highly reproducible for molecular level detection (Dhawan et al., 2013; Shah et al., 2015b). Sharma et al. (2014a) first time developed three polymorphic and one region specific SCAR from RAPD as well as genotype (RGC-1031) specific SCAR from ISSR to elevate the polymorphism reproducibility and specificity of RAPD and ISSR markers. Evolution pressure may cause variation in the number and arrangement pattern of nucleotides in Internal Transcribed Spacer (ITS) regions of ribosomal DNA (rDNA; Sharma et al., 2002). Due to easy amplification and better polymorphism, ITS spacers are considered as versatile genetic markers for phylogenetic and diver- 643 sity analysis (Powers et al., 1997; Beltrame-Botelho et al., 2005). Nuclear ribosomal ITS region (ITS-1 & 2; and 5.8S rDNA) primers reported in fungi by White et al. (1990) have also been applied by Pathak et al. (2011d) to assess the genetic diversity in cluster bean. DNA sequence analysis of rDNA ITS demonstrated high frequencies of single nucleotide polymorphisms in amplified conserved DNA stretch at seven positions and indicated a close lineage of diverse genotypes. However, as compared to other legumes, sequence based DNA markers especially microsatellites or simple sequence repeats (SSRs) are inadequate in cluster bean (Kumar et al., 2015) consequently the molecular breeding efforts in cluster bean are not implemented swiftly (Kuravadi et al., 2014). As the initial development cost of microsatellite markers is high, publically available data base expressed sequence tags (dbESTs) is a cheaper source to identify SSRs. Though, cluster bean is a crop with high industrial demand, but adoption of various “omics” approaches like transcriptomics and genomics are slow; hence merely 16,476 ESTs, submitted by Naoumkina et al. (2007), are available in the National Center for Biotechnology Information (NCBI) database. Kuravadi et al. (2014) and Kumar et al. (2015) mined these ESTs and identified 187 and 100 SSR markers, respectively. EST-SSR based diversity analysis of 32 cluster bean genotypes of displayed narrow genetic diversity as mean polymorphic information content (0.13) of markers and average dissimilarity co-efficient (0.09) was low (Kumar et al., 2015). The high level of similarity reported by Kumar et al. (2015) was inconsistent from earlier reports (Pathak et al., 2010a,b; Kumar et al., 2013; Sharma et al., 2014b) which may be because of deployment of different marker system. Thus, on the basis of SSR based results it is advisable that there is necessity to develop genomic SSR markers or recent high throughput marker systems like single nucleotide polymorphism (SNP) or genotypingby-sequencing (GBS; Elshire et al., 2011), for effective deployment of markers for cluster bean improvement. 3.2. Tissue culture, regeneration protocols and genetic transformation Tissue culture based technique such as micro-propagation and genetic transformation offer a supplementary approach to marker assisted and conventional breeding strategies for the improvement of cluster bean. Although there are very few constraints associated with conventional propagation methods, tissue culture approach is still in the flow. Generally, micro-propagation is used for avoidance of post fertilization barriers, production of large scale single gendered true-to-type plants being dioecious in nature (Kumar et al., 2010a, 2010b), to produce plants having less germination percentage (Modi et al., 2012), to enhance secondary chemicals and, most importantly, to establish regeneration protocol for genetic transformation as far as crop improvement is concerned (Karupussamy, 2009). Success of in-vitro regeneration of any plant species depends on several factors like explants and explant source, medium composition, type of hormones, media composition, culture condition, etc (Kalia et al., 2014). In most studies, Murashige and Skoog (MS) medium was used for cluster bean regeneration. Several attempts have been made to establish protocol for micropropagation of cluster bean for both production and crop improvement which are summarized in Table 2. In context to in-vitro regeneration and tissue culture, the work on cluster bean was started by Ramulu and Rao, (1987). Both these researchers reported many in vitro regeneration protocols on MS and B5 media for establishment and enhancement of callus in cluster bean (Ramulu and Rao, 1989, 1991, 1993, 1996). However, attempts for callus induction were not just limited to unorganized mass, but reports are available on direct differentiation from cotyledonary nodes using cytokinins (Prem et al., 644 S. Kumar et al. / Industrial Crops and Products 97 (2017) 639–648 Table 1 Deployment of various DNA markers in cluster bean for diversity analysis and genetic relationships studies. Name/number of genotypes with collection region Country Type of markera Number and list of primers Reference HG365, HG563, RGC936, HG75, PNB, PLG225, GG1, Naveen, HGS854, RGC1017, RGC1022, GUAG9002, GAUG9009, Kiran, IC102827, IC116525, IC116529, IC116874 Genotypes: 32 Regions: Rajasthan, Gujarat and Haryana RGC 1080, RGC 1092, RGC 1038, RGC 1059, RGC 1002, RGC 1030, CAZG 6, CAZG 50, Vikas 35, WSP 50, HGS 365, HGS 02-29, HG 155-156, HGS 26-01, GAUG 9703, GAUG 9808, GAUG 01, GAUG 13 Landraces: 29 Commercial varieties: 19 Regions: Gujarat, Rajasthan, Haryana and Delhi IC-102828, IC-103019, IC-102853, PNB, IC-103020, HVG-2-30, HG-2-4, HG-563, HG-2-20, RGC-471, PRT-15, HG-365 AVT-G-1, AVT-G-2, G-6, G-7, IVT-G-8, G-9, IVT-G-11, G-12, IVT-G-12, IVT-G-14, IVT-G-16, G-17, IVT-G-18, G-19, G-20 HGS 867, RGC 471, RGC 986, HGS, 870, RGC 936, RGC 197, GG 1, HG 365, RGC 1025, HG 563, HFG 119, RGC 1003, Pusa Navbhar, M 83, RGC 1002, HG 75, Naveen, RGC 1017, FS 277, Kiran, HG 182, HGS 884, HG 258 India RAPD 37 random decamers Punia et al. (2009) India RAPD OPA-16, OPP-7, OPB-12, OPP-9, OPA-14 Pathak et al. (2010b) India RAPD OPA-1, OPA-4, OPA-6, OPA-11, OPA-17, OPA-18, OPB-10, OPB-12, OPB-18 Pathak et al. (2011d) India RAPD Kuravadi et al. (2013) India RAPD OPA-1, OPD-12, OPM-2, OPM-12, OPM-15, OPN-1 to 5, OPQ-9, OPU-15, OPX-12 OPA-1 to 5, OPA-7 to 12, OPB-5 India RAPD OPQ-5, OPQ-7, OPQ-11 Ajit and Priyadarshani (2013) India RAPD Kumar et al. (2013) RGC 936, RGC 1002, RGC 1003, RGC 1031, RGC 1017 RGC 1017, RGC 1003, RGC 1066, RGC 1002, RGC 936, RGC 1031, Pusa Navbhar, PNB, Neelam 51, Pusa Selection I, Swati 55 Landraces: 29 Commercial varieties: 19 Regions: Gujarat, Rajasthan, Haryana and Delhi Number of genotypes: 30 Regions: Bahawalpur, Bhakkar, Pakpattan India India RAPD RAPD OPD-2, OPD-3, OPD-5, OPD-7, OPD-8, OPE-1, OPAB-13, OPAS-6, OPAA-16, OPAS-10, OPAR-5, OPAO-3, OPAM-7, OPAH-3, OPAF-4, OPAF-10, OPZ-9, OPI-3, OPI-5, OPI-6, OPI-9 Numbers of primers: 15 Numbers of primers: 15 India ISSR UBC 808, UBC 818, UBC 820, UBC 854, UBC 856, UBC 868, UBC 879 Kuravadi et al. (2013) Pakistan RAPD Sultan et al. (2013) Rajasthan − 14 genotypes Haryana − 7 genotypes Gujarat − 4 genotypes Uttar Pradesh − 5 genotypes Punjab − 3 genotypes Madhya Pradesh − 2 genotypes Numbers of genotypes: 35 Locations: Rajasthan, Haryana, Gujarat, Uttar Pradesh, Punjab, Madhya Pradesh Numbers of genotype: 12 M-83, RGC1066, RGC1002, C. serrata, C. senegalensis India RAPD OPB-1, OPB-3, OPB-4, OPB-5, OPB-11, OPB-14, OPB-16, OPB-17, OPB-18, OPB-19, OPB-20, OPA-13 15 RAPD primers India ISSR Numbers of primers: 10 Sharma et al. (2014b) India India Numbers of primers: 19 Numbers of primers: 224 Kalaskar et al. (2014) Kuravadi et al. (2014) Commercial varieties: 31 Regions: Gujarat, Rajasthan, Haryana and Delhi Numbers of genotype: 31 India RAPD ESTSSR ESTSSR ESTSSR AFLP Numbers of primers: 39 Kumar et al. (2015) Numbers of primers: 17 Boghara et al. (2015) EcoRI + A and MseI + C Gresta et al. (2016) Numbers of genotypes: 8 Regions: South Africa, India and the United States India Italy Patel et al. (2014) Sharma and Sharma (2013) Sharma et al. (2013) Sharma et al. (2014b) a RAPD: Random Amplification of Polymorphic DNA; ISSR: Inter-Simple Sequence Repeat; AFLP: Amplified fragment length polymorphism (AFLP); EST-SSR: Expressed Sequence Tag-Simple Sequence Repeat. 2003) and shoot organogenesis in cluster bean via callus culture (Prem et al., 2005). To induce endosperm callus from embryo or cotyledon seed explants, Bhansali (2011) reported that MS media supplemented with 2, 4-D, IAA, NAA in combination with BAP is the most suitable. Till 2013, the work was carried out on cultivated species but Ahlawat et al. (2013a) successfully induced callusing in cultivated as well as two wild species viz. C. serrata and C. senegalensis using cotyledon explant. Whilst, most of the research proved 2,4-D and BAP as excellent plant growth regulators to induce callus and regeneration, Gargi et al. (2012) showed multiple shoot induction with gibberellins along with 2,4-D and BAP as PGRs whereas, Meghwal et al. (2014) showed that the combination of BA, kinetin and gibberellins was most suitable for multiple shoot generation. In order achieve to prompt shoot multiplication from cotyledonary node explants, Ahmad and Anis (2007) and Ahmad et al. (2012) used thidiazuron (TDZ-phenyl-urea derivatives) instead of conventional cytokinin activity of BAP. Plant regeneration protocol, either direct or indirect, have been the priority to most of the researcher groups working with the aim of crop improvement in cluster bean. Among them, Verma et al. (2013) found regeneration with the same explant placed on medium supplemented with various combinations of indole3-butyric acid (IBA), BAP and gibberellin and they also observed rooting on the same medium after 10 days of shooting. They transferred these rooted shoot plantlets for the acclimatization on cocopeat mixture and showed successful hardening. Progress was also seen in the establishment of the regeneration protocol where Mathiyazhagan et al. (2013) reported somatic embryogenesis on MS medium fortified with 2 mgl−1 NAA, 0.5 mgl−1 and 3gl−1 charcoal using mature embryo as an explant in cultivated species of cluster bean. They also reported direct shoot regeneration from cotyledonary node placed on MS medium containing 1 mgl−1 Kn, 0.5 mgl−1 and 1 mgl−1 Zeatin on both cultivated and wild species. The information on somatic embryogenesis in cluster bean is still absent. The race for the establishment of simple and efficient regeneration protocol was started from the work done by Prem et al. (2003) who tried to regenerate plant from cotyledonary node explant and showed successful plantlet formation and 645 S. Kumar et al. / Industrial Crops and Products 97 (2017) 639–648 Table 2 Tissue culture protocols for culture establishment and micropropagation in cluster bean. Objective Explant source Optimized/Used Media compositiona Results Reference Establishment of callus culture Enhancement of callus yield Epicotyls, hypocotyls and cotyledons Hypocotyls Maximum callus with 1.5 mg/l 2, 4-D and 0.5 mg/l Kinetin Fresh and dry weight of callus were enhanced 3.7 and 3.9 times than control, respectively Ramulu and Rao (1987) Establishment of callus culture Effect of different media on establishment of callus cultures Study of genotypic response to various auxins Direct organogenesis Leaf MS + IAA + NAA + 2,4D + Kinetin B5 + 1.5 mg/l 2,4-D + 1 mg/l Kinetin + 2.5 mg/l yeast extract/15% coconut milk/2.5 gm/l casein hydrolysate B5 + NAA + BAP Ramulu and Rao (1989) B5 medium supplemented with 2.5 mg/l NAA and 1.25 mg/l BAP MS/B5/SH/Blayde’s/White’s Highest callus frequency in B5 with 2.5 mg/l 2, 4-D and 0.75 mg/l kinetin Ramulu and Rao (1991) Leaf 2,4D/NAA/IAA/Picloram Picloram was found most effective for callus growth Ramulu and Rao (1996) Embryo, Cotyledons, Cotyledonary nodes MS + BAP + IAA Prem et al. (2003) Indirect organogenesis Embryo, cotyledons, cotyledonary nodes, shoot tip and hypocotyls MS + 2,4-D + BAP Response of wild types to auxins Indirect organogenesis in wild species Cotyledon Auxins Cotyledon, cotyledonary node and hypocotyls cotyledon, cotyledonary node, embryo axis and hypocotyl Cotyledonary nodes MS + B5 vitamis + 2,4D + BAP + NAA Cotyledonary nodes showed highest frequency of multiple shoot with 3 mg/l BAP and 2 mg/l NAA Embryo or cotyledonary explants on media with 10.0 ␮M 2,4-D and 5.0 ␮M BAP showed callus frequency of 82–95% 20-25 shoots per callus was obtained on MS medium supplemented with 13.0 ␮M NAA and 5.0 ␮M BAP. C. serrata and C. senegalensis showed good callusing exposed to 2, 4-D in the medium. Cotyledonary explants were found best in all tested medium. MS + Auxins + Cytokinins Combinations of various growth regulators were not found suitable for the regeneration Deepika et al. (2014) Green friable morphogenic callus Highest frequency of multiple shoot formation Gargi et al. (2012) Green friable morphogenic callus; Enhanced branching and regeneration of shoots Meghwal et al. (2014) MS + 2 mg/l IBA + 3 mg/l BAP + 1 mg/l GA3 showed highest percentage of shooting (92%) and rooting (80%) TDZ at 5.0 ␮M showed successful regeneration Established somatic embryo with this medium. Highest (34%) shoot morphogenesis with 20 ␮M BAP. Verma et al. (2013) Indirect organogenesis Indirect organogenesis Hypocotyls Indirect organogenesis Cotyledons, hypocotyls and epicotyls Establishment of regeneration protocol Cotyledons MS + 5 ␮M BAP + 10 ␮M 2,4-D MS + 10 ␮M BAP + 10 ␮M Kn + 5 ␮M GA3 MS + 1.2 mg/l 2,4-D + 0.6 mg/l BAP MS + 2 mg/l BAP + 2 mg/l Kn + 1 mg/l GA3 MS + IBA + BAP + GA3 Shoot multiplication Cotyledonary nodes MS + TDZ Somatic embryogenesis Mature embryo In vitro regeneration Cotyledons and cotyledonary nodes MS + 2 mg/l NAA + 3 g/l Charcoal B5 + 2 mg/l NAA + 2 mg/l BAP Ramulu and Rao (1993) Prem et al. (2005) Ahlawat et al. (2013a) Ahlawat et al. (2013b) Ahmad and Anis (2007); Singh et al. (2015) Mathiyazhagan et al. (2013) Sheikh et al. (2015) a MS: Murashige and Skoog (MS) medium; BAP: 6-Benzylaminopurine; IAA: Indole-3-acetic acid; NAA: 1-Naphthaleneacetic acid; Kn: kinetin; IBA: Indole-3-butyric acid; GA3 : Gibberellic acid; 2, 4D: 2,4-Dichlorophenoxyacetic acid; B5: Gamborg B5 medium; TDZ: Thidiazuron. subsequent hardening. And still the race is going on to establish “an efficient” regeneration protocol (Sheikh et al., 2015). Legumes are considered ‘recalcitrant’ for genetic transformation studies and regeneration of transformed plantlets remains the major hurdle (Somers et al., 2003). Prem (1999) for the first time performed an experiment on genetic transformation of cluster bean using two different strains of Agrobacterium tumefaciens. Amongst the strains used, strain LBA4404 harbouring plasmids p35SGUSINT:pAL4404gave wide spread GUS expression in 14 days old co-cultivated explants and found to be more effective than EHA105. In another study, using construct pBKL4 containing uidA and nptII genes, Joersbo et al. (1999) has also transformed ˇgluoronidase and neomycin phosphotransferase genes in cluster bean and produced stable transformants up to 3rd generation. Results of this study showed30% selection efficiency on kanamycin sulphate (145 mgl/l) and 1.2% of transformation efficiency with most of the transformants containing single copy of each gene transformed. The choice of antibiotic used is a crucial step as these can also hinder the growth of the plant being regenerated. Joersbo et al. (2001) also made another attempt of transformation of guar where alphagalactosidase gene from Senna occidentalis was transformed. The cDNA of the gene, isolated from senna, had 75% identical sequences with the ␣-galactosidase expressed in germinating guar and coffee beans. They observed reduction in galactomannan content in 30% of transformants (although it was an era of taking cluster bean as a model to evaluate the function of other genes of other plants, still the race for the establishment of “an efficient” regeneration protocol was not started). 646 S. Kumar et al. / Industrial Crops and Products 97 (2017) 639–648 The transformation of soybean with ManS gene of guar localized a significant amount of gum in soybean seeds and thus offered avenues for the production of guar gum other species which does not have the galactomannan gum synthesizing genes (Dhugga et al., 2004). Even though micropropagation technique can be used to enhance secondary metabolites at large scale (Karupussamy, 2009), no attempts were carried out to enhance galactomannan content through such technique. Indeed, under the influence of strong promoter, the respective gene, mannan synthase, has been transferred to Medicago truncatula and transformation was attempted to enhance trehalose phosphate. An important work regarding promoter, which enhances tissue specific expression of transgene, was carried out by Rasmussen and Donaldson (2006). They isolated promoter of sucrose synthase gene from rice termed rsus3 and evaluated luciferase and GUS activity, under its regulation, in guar endosperm. They found the promoter very strong for endosperm tissue. Considering this work for the enhancement of galactomannan content through over expression of respective gene in endosperm, one can have an option to manipulate this promoter influencing over-expression of downstream transgene. Similar promoter from guar (mannan synthase promoter) was also isolated by Naoumkina and Dixon (2011). 4. Conclusion and future prospects Cluster bean crop has experienced a remarkable journey from a traditional rainfed crop grown on marginal lands mainly for food, animal feed and fodder to a crop with various industrial usages. This is a drought resilient high valued crop with diverse and unique applications. Productivity in terms of yield/hectare as well gum content is generally very low. The key reasons for low productivity is nonavailability of high yielding varieties, new sources of genes and diverse germplasm. Moreover, cluster bean is susceptible many foliar diseases like bacterial leaf blight (Xanthomonas axonopodis pv. Cyamopsidis), leaf spot (Alternaria spp.) and powdery mildew. Therefore, cluster bean breeding should be targeted to increase and stabilize yield and gum production of varieties along with inbuilt resistance against these diseases. Useful variants should also identify using intense mutagenesis. 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